[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 329 items for (author: wang & ty)

EMDB-37240:
SARS-CoV-2 Omicron spike in complex with 5817 Fab
Method: single particle / : Cao L, Wang X

EMDB-37241:
The interface structure of Omicron RBD binding to 5817 Fab
Method: single particle / : Cao L, Wang X

EMDB-29941:
HPV16 E6-E6AP-p53 complex
Method: single particle / : Bratkowski MA, Wang JCK, Hao Q, Nile AH

EMDB-41048:
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Method: single particle / : Gorman J, Kwong PD

PDB-8t5c:
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Method: single particle / : Gorman J, Kwong PD

EMDB-41510:
Eukaryotic translation initiation factor 2B tetramer
Method: single particle / : Wang L, Lawrence R, Sangwan S, Anand A, Shoemaker S, Deal A, Marqusee S, Watler P

EMDB-41566:
Eukaryotic translation initiation factor 2B with a mutation (L516A) in the delta subunit
Method: single particle / : Wang L, Lawrence R, Sangwan S, Anand A, Shoemaker S, Deal A, Marqusee S, Watler P

PDB-8tqo:
Eukaryotic translation initiation factor 2B tetramer
Method: single particle / : Wang L, Lawrence R, Sangwan S, Anand A, Shoemaker S, Deal A, Marqusee S, Watler P

PDB-8tqz:
Eukaryotic translation initiation factor 2B with a mutation (L516A) in the delta subunit
Method: single particle / : Wang L, Lawrence R, Sangwan S, Anand A, Shoemaker S, Deal A, Marqusee S, Watler P

EMDB-34948:
Cryo-EM structure of the apo-GPR132-Gi
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-34950:
Activation mechanism of GPR132 by NPGLY
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-34951:
Activation mechanism of GPR132 by 9(S)-HODE
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-35044:
Activation mechanism of GPR132 by compound NOX-6-7
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-28910:
Glycan-Base ConC Env Trimer
Method: single particle / : Olia AS, Kwong PD

PDB-8f7t:
Glycan-Base ConC Env Trimer
Method: single particle / : Olia AS, Kwong PD

EMDB-41302:
Lassa GPC trimer in complex with Fab GP23
Method: single particle / : Gorman J, Kwong PD

EMDB-33650:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33651:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y71:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y72:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-34879:
The nanotube of Ralstonia solanacearum lectin(RSL) induced by F3R
Method: helical / : Li L, Chen G

EMDB-29725:
Vaccine-elicited human antibody 2C06 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Morano NC, Shapiro L, Kwong PD

EMDB-29731:
Vaccine-elicited human antibody 2C09 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Kwong PD

PDB-8g4m:
Vaccine-elicited human antibody 2C06 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Morano NC, Shapiro L, Kwong PD

PDB-8g4t:
Vaccine-elicited human antibody 2C09 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Kwong PD

EMDB-27205:
Closed state of SARS-CoV-2 BA.2 variant spike protein
Method: single particle / : Zhang J, Tang WC, Gao HL, Shi W, Peng HQ, Volloch SR, Xiao TS, Chen B

EMDB-27206:
One RBD-up state of SARS-CoV-2 BA.2 variant spike protein
Method: single particle / : Zhang J, Tang WC, Gao HL, Shi W, Peng HQ, Volloch SR, Xiao TS, Chen B

EMDB-27207:
Middle state of SARS-CoV-2 BA.2 variant spike protein
Method: single particle / : Zhang J, Tang WC, Gao HL, Shi W, Peng HQ, Volloch SR, Xiao TS, Chen B

PDB-8d55:
Closed state of SARS-CoV-2 BA.2 variant spike protein
Method: single particle / : Zhang J, Tang WC, Gao HL, Shi W, Peng HQ, Volloch SR, Xiao TS, Chen B

PDB-8d56:
One RBD-up state of SARS-CoV-2 BA.2 variant spike protein
Method: single particle / : Zhang J, Tang WC, Gao HL, Shi W, Peng HQ, Volloch SR, Xiao TS, Chen B

PDB-8d5a:
Middle state of SARS-CoV-2 BA.2 variant spike protein
Method: single particle / : Zhang J, Tang WC, Gao HL, Shi W, Peng HQ, Volloch SR, Xiao TS, Chen B

EMDB-28067:
CryoEM reconstruction of tri-specific 298-52-80 Multabody (no symmetry applied)
Method: single particle / : Kucharska I, Cui H, Rubinstein JL, Julien JP

EMDB-28068:
CryoEM reconstruction of the tri-specific 298-52-80 Multabody (octahedral symmetry applied)
Method: single particle / : Kucharska I, Cui H, Rubinstein JL, Julien JP

EMDB-26859:
Ligand-free Lassa GPC Trimer with C3 Symmetry
Method: single particle / : Gorman J, Kwong PD

EMDB-26740:
Ligand-free Lassa GPC Trimer with C1 Symmetry
Method: single particle / : Gorman J, Kwong PD

EMDB-33401:
PSI-LHCI-LHCII-Lhcb9 supercomplex of Physcomitrella patens
Method: single particle / : Zhang S, Tang KL, Li XY, Wang WD, Yan QJ, Shen LL, Kuang TY, Han GY, Shen JR, Zhang X

EMDB-29916:
Subtomogram average of the AnaS GV shell
Method: subtomogram averaging / : Dutka P, Metskas LA, Hurt RC, Salahshoor H, Wang TY, Malounda D, Lu GJ, Chou TF, Shapiro MG, Jensen JJ

EMDB-29396:
Antibody vFP53.02 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Kwong PD

EMDB-29836:
vFP52.02 Fab in complex with BG505 DS-SOSIP Env trimer
Method: single particle / : Gorman J, Kwong PD

EMDB-29880:
Cryo-EM structure of vFP49.02 Fab in complex with HIV-1 Env BG505 DS-SOSIP.664 (conformation 1)
Method: single particle / : Changela A, Gorman J, Kwong PD

EMDB-29881:
Cryo-EM structure of vFP49.02 Fab in complex with HIV-1 Env BG505 DS-SOSIP.664 (conformation 2)
Method: single particle / : Changela A, Gorman J, Kwong PD

EMDB-29882:
Cryo-EM structure of vFP49.02 Fab in complex with HIV-1 Env BG505 DS-SOSIP.664 (conformation 3)
Method: single particle / : Changela A, Gorman J, Kwong PD

EMDB-29905:
vFP48.02 Fab in complex with BG505 DS-SOSIP Env trimer
Method: single particle / : Gorman J, Kwong PD

PDB-8fr6:
Antibody vFP53.02 in complex with HIV-1 envelope trimer BG505 DS-SOSIP
Method: single particle / : Wang S, Kwong PD

PDB-8g85:
vFP52.02 Fab in complex with BG505 DS-SOSIP Env trimer
Method: single particle / : Gorman J, Kwong PD

PDB-8g9w:
Cryo-EM structure of vFP49.02 Fab in complex with HIV-1 Env BG505 DS-SOSIP.664 (conformation 1)
Method: single particle / : Changela A, Gorman J, Kwong PD

PDB-8g9x:
Cryo-EM structure of vFP49.02 Fab in complex with HIV-1 Env BG505 DS-SOSIP.664 (conformation 2)
Method: single particle / : Changela A, Gorman J, Kwong PD

PDB-8g9y:
Cryo-EM structure of vFP49.02 Fab in complex with HIV-1 Env BG505 DS-SOSIP.664 (conformation 3)
Method: single particle / : Changela A, Gorman J, Kwong PD

PDB-8gas:
vFP48.02 Fab in complex with BG505 DS-SOSIP Env trimer
Method: single particle / : Gorman J, Kwong PD

EMDB-29921:
Subtomogram average of the native Ana GV shell
Method: subtomogram averaging / : Dutka P, Metskas LA, Hurt RC, Salahshoor H, Wang TY, Malounda D, Lu GJ, Chou TF, Shapiro MG, Jensen JJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more